COSAM » COSAM Faculty » Physics (ARCHIVED) » Rafael Bernardi
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Physics
Assistant Professor
Research Areas: Computational Biophysics
Office: Leach Science Center 2114
Address:
380 Duncan Drive
Auburn, AL 36849
Phone: 334-844-4393
E-Mail: rcbernardi@auburn.edu
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- LF Milles, K Schulten, HE Gaub‡, RC Bernardi‡; Molecular mechanism of extreme mechanostability in a pathogen surface anchor; Science, 359 (6383), 1527-1533, 2018
- MCR Melo*, RC Bernardi*, T Rudack, M Scheurer, C Riplinger, JC Phillips, JDC Maia, GB Rocha, JV Ribeiro, JE Stone, F Neese, K Schulten, Z Luthey-Schulten; NAMD goes quantum: A new integrative suite for hybrid simulations; Nature Methods, 15 (5), 351-354, 2018
- RC Bernardi‡*, E Durner*, C Schoeler, KH Malinowska, BG Carvalho, EA Bayer, Z Luthey-Schulten, HE Gaub, MA Nash‡; Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy; Journal of the American Chemical Society, 141 (37), 14752-14763, 2019
- T Verdorfer, RC Bernardi, A Meinhold, W Ott, Z Luthey-Schulten, MA Nash, HE Gaub; Combining in Vitro and in Silico Single Molecule Force Spectroscopy to Characterize and Tune Cellulosomal Scaffoldin Mechanics; Journal of The American Chemical Society, 139 (49), 17841-17852, 2017 – Cover Article
- SM Sedlak*, LC Schendel*, HE Gaub‡, RC Bernardi‡; Streptavidin/biotin: tethering geometry defines unbinding mechanics; Science Advances, 6 (13), eaay5999, 2020
- C Schoeler*, RC Bernardi*, KH Malinowska, E Durner, W Ott; EA Bayer; K Schulten; MA Nash; HE Gaub; Mapping mechanical force propagation through biomolecular complexes; Nano Letters, 15 (11), 7370-7376, 2015 – Cover Article
- SM Sedlak*, LC Schendel*, MCR Melo, DA Pippig, Z Luthey-Schulten, HE Gaub, RC Bernardi‡; Direction Matters – Monovalent Streptavidin/Biotin Complex under Load; Nano Letters, 19 (6), 3415-3421, 2019 – Cover Article
- C Schoeler*, KH Malinowska*, RC Bernardi, LF Milles, MA Jobst, E Durner, W Ott, DB Fried, EA Bayer, K Schulten, HE Gaub, MA Nash; Ultrastable cellulosome-adhesion complex tightens under load; Nature Communications, 5, 5635, 2014
- Z Liu, H Liu, AM Vera, RC Bernardi, P Tinnefeld, MA Nash; High force catch bond mechanism of bacterial adhesion in the human gut; Nature Communications, 11, 4321, 2020
- JC Phillips, D Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, R Buch, G Fiorin, J Hénin, W Jiang, R McGreevy, MCR Melo, BK Radak, RD Skeel, A Singharoy, Y Wang, B Roux, A Aksimentiev, Z Luthey-Schulten, LV Kalé, K Schulten, C Chipot, E Tajkhorshid; Scalable Molecular Dynamics on CPU and GPU Architectures with NAMD; The Journal Chemical Physics, 153 (4), 44130, 2020
* Co-first author (equally contributing) ‡ Corresponding Author
For full list of publication see Google Scholar.
Citations
According to Google Scholar, my work has been cited over 1,000 times.
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Last updated: 03/24/2021